Index Symbols | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W Symbols --config-file volara-blockwise-worker command line option --log-level volara command line option -c volara-blockwise-worker command line option A affs_data (volara.blockwise.AffAgglom attribute) (volara.blockwise.ExtractFrags attribute) (volara.blockwise.SeededExtractFrags attribute) agglomerate() (volara.blockwise.AffAgglom method) agglomerate_in_block() (volara.blockwise.AffAgglom method) (volara.blockwise.DistanceAgglom method) aligned (volara.blockwise.ApplyShift attribute) apply_shift() (volara.blockwise.ApplyShift static method) argmax_block() (volara.blockwise.Argmax method) array() (volara.datasets.Dataset method) (volara.datasets.Raw method) attrs (volara.datasets.Affs property) (volara.datasets.Dataset property) (volara.datasets.Labels property) (volara.datasets.LSD property) (volara.datasets.Raw property) axis_names (volara.datasets.Dataset attribute) B background_intensities (volara.blockwise.DistanceAgglom attribute) benchmark() (volara.blockwise.BlockwiseTask method) bias (volara.blockwise.ExtractFrags attribute) (volara.blockwise.SeededExtractFrags attribute) block_ds (volara.blockwise.BlockwiseTask property) block_size (volara.blockwise.AffAgglom attribute) (volara.blockwise.ApplyShift property) (volara.blockwise.Argmax attribute) (volara.blockwise.ComputeShift attribute) (volara.blockwise.DistanceAgglom attribute) (volara.blockwise.ExtractFrags attribute) (volara.blockwise.Relabel attribute) (volara.blockwise.SeededExtractFrags attribute) (volara.blockwise.Threshold attribute) block_write_roi (volara.blockwise.BlockwiseTask property) bounded_read (volara.blockwise.GraphMWS attribute) bounds (volara.datasets.Raw property) C cast_path() (volara.dbs.SQLite class method) cast_store() (volara.datasets.Dataset class method) channels (volara.datasets.Raw attribute) check_block_func() (volara.blockwise.BlockwiseTask method) combine_classes (volara.blockwise.Argmax attribute) compute_fragments() (volara.blockwise.ExtractFrags method) compute_shift() (volara.blockwise.ComputeShift static method) config_file (volara.blockwise.BlockwiseTask property) context (volara.blockwise.AffAgglom attribute) (volara.blockwise.ApplyShift property) (volara.blockwise.ComputeShift attribute) (volara.blockwise.DistanceAgglom attribute) (volara.blockwise.ExtractFrags attribute) (volara.blockwise.SeededExtractFrags attribute) context_size (volara.blockwise.AffAgglom property) (volara.blockwise.ApplyShift property) (volara.blockwise.Argmax property) (volara.blockwise.BlockwiseTask property) (volara.blockwise.ComputeShift property) (volara.blockwise.DistanceAgglom property) (volara.blockwise.ExtractFrags property) (volara.blockwise.GraphMWS property) (volara.blockwise.Relabel property) (volara.blockwise.SeededExtractFrags property) (volara.blockwise.Threshold property) D dataset_type (volara.datasets.Affs attribute) (volara.datasets.Labels attribute) (volara.datasets.LSD attribute) (volara.datasets.Raw attribute) db (volara.blockwise.AffAgglom attribute) (volara.blockwise.ExtractFrags attribute) (volara.blockwise.GraphMWS attribute) db_type (volara.dbs.PostgreSQL attribute) (volara.dbs.SQLite attribute) default_edge_attrs (volara.dbs.DB property) default_node_attrs (volara.dbs.DB property) distance_keys (volara.blockwise.DistanceAgglom attribute) distance_metric (volara.blockwise.DistanceAgglom attribute) distance_threshold (volara.blockwise.DistanceAgglom attribute) drop() (volara.blockwise.BlockwiseTask method) (volara.datasets.Dataset method) (volara.dbs.DB method) (volara.dbs.PostgreSQL method) (volara.dbs.SQLite method) drop_artifacts() (volara.blockwise.AffAgglom method) (volara.blockwise.ApplyShift method) (volara.blockwise.Argmax method) (volara.blockwise.BlockwiseTask method) (volara.blockwise.ComputeShift method) (volara.blockwise.DistanceAgglom method) (volara.blockwise.ExtractFrags method) (volara.blockwise.GraphMWS method) (volara.blockwise.Relabel method) (volara.blockwise.SeededExtractFrags method) (volara.blockwise.Threshold method) drop_edges() (volara.dbs.DB method) (volara.dbs.PostgreSQL method) (volara.dbs.SQLite method) E edge_attrs (volara.dbs.DB attribute) edge_per_attr (volara.blockwise.GraphMWS attribute) eps (volara.blockwise.DistanceAgglom attribute) F filter_avg_fragments() (volara.blockwise.ExtractFrags method) filter_fragments (volara.blockwise.ExtractFrags attribute) fit (volara.blockwise.AffAgglom attribute) (volara.blockwise.ApplyShift attribute) (volara.blockwise.Argmax attribute) (volara.blockwise.BlockwiseTask attribute) (volara.blockwise.ComputeShift attribute) (volara.blockwise.DistanceAgglom attribute) (volara.blockwise.ExtractFrags attribute) (volara.blockwise.GraphMWS attribute) (volara.blockwise.Relabel attribute) (volara.blockwise.SeededExtractFrags attribute) (volara.blockwise.Threshold attribute) frags_data (volara.blockwise.AffAgglom attribute) (volara.blockwise.DistanceAgglom attribute) (volara.blockwise.ExtractFrags attribute) (volara.blockwise.Relabel attribute) G get_benchmark_logger() (volara.blockwise.BlockwiseTask method) get_fragments() (volara.blockwise.ExtractFrags method) get_seeds() (volara.blockwise.ExtractFrags method) get_task() (in module volara.blockwise) graph_attrs (volara.dbs.DB property) graph_db (volara.blockwise.SeededExtractFrags attribute) H host (volara.dbs.PostgreSQL attribute) I id (volara.dbs.DB property) (volara.dbs.PostgreSQL property) (volara.dbs.SQLite property) in_data (volara.blockwise.Threshold attribute) init() (volara.blockwise.AffAgglom method) (volara.blockwise.ApplyShift method) (volara.blockwise.Argmax method) (volara.blockwise.BlockwiseTask method) (volara.blockwise.ComputeShift method) (volara.blockwise.ExtractFrags method) (volara.blockwise.Relabel method) (volara.blockwise.SeededExtractFrags method) (volara.blockwise.Threshold method) (volara.dbs.DB method) init_block_array() (volara.blockwise.BlockwiseTask method) init_out_array() (volara.blockwise.ApplyShift method) (volara.blockwise.Argmax method) (volara.blockwise.ComputeShift method) (volara.blockwise.ExtractFrags method) (volara.blockwise.Relabel method) (volara.blockwise.SeededExtractFrags method) (volara.blockwise.Threshold method) intensities (volara.blockwise.ApplyShift attribute) (volara.blockwise.ComputeShift attribute) interp_shifts (volara.blockwise.ApplyShift attribute) L label_distances() (volara.blockwise.DistanceAgglom method) lut (volara.blockwise.GraphMWS attribute) (volara.blockwise.Relabel attribute) M map_block() (volara.blockwise.Relabel method) mark_block_done_func() (volara.blockwise.BlockwiseTask method) mask (volara.blockwise.ComputeShift attribute) (volara.blockwise.Threshold attribute) mask_data (volara.blockwise.ExtractFrags attribute) (volara.blockwise.SeededExtractFrags attribute) mean_attrs (volara.blockwise.GraphMWS attribute) meta_dir (volara.blockwise.BlockwiseTask property) min_seed_distance (volara.blockwise.ExtractFrags attribute) model_post_init() (volara.blockwise.AffAgglom method) (volara.blockwise.ApplyShift method) (volara.blockwise.Argmax method) (volara.blockwise.BlockwiseTask method) (volara.blockwise.ComputeShift method) (volara.blockwise.DistanceAgglom method) (volara.blockwise.ExtractFrags method) (volara.blockwise.GraphMWS method) (volara.blockwise.Relabel method) (volara.blockwise.SeededExtractFrags method) (volara.blockwise.Threshold method) (volara.datasets.Affs method) module volara.datasets volara.dbs N name (volara.datasets.Dataset property) (volara.dbs.PostgreSQL attribute) ndim (volara.dbs.DB attribute) neighborhood (volara.blockwise.ExtractFrags property) (volara.datasets.Affs attribute) node_attrs (volara.dbs.DB attribute) noise_eps (volara.blockwise.ExtractFrags attribute) num_cache_workers (volara.blockwise.BlockwiseTask attribute) num_voxels_in_block (volara.blockwise.ExtractFrags property) (volara.blockwise.GraphMWS property) num_workers (volara.blockwise.BlockwiseTask attribute) O offset (volara.datasets.Dataset attribute) ome_norm (volara.datasets.Raw attribute) open() (volara.dbs.DB method) (volara.dbs.PostgreSQL method) (volara.dbs.SQLite method) out_db (volara.blockwise.GraphMWS attribute) output_datasets (volara.blockwise.AffAgglom property) (volara.blockwise.ApplyShift property) (volara.blockwise.Argmax property) (volara.blockwise.ComputeShift property) (volara.blockwise.DistanceAgglom property) (volara.blockwise.Relabel property) (volara.blockwise.SeededExtractFrags property) (volara.blockwise.Threshold property) overlap_ratio (volara.blockwise.ComputeShift attribute) P password (volara.dbs.PostgreSQL attribute) path (volara.dbs.SQLite attribute) prepare() (volara.datasets.Dataset method) probs_data (volara.blockwise.Argmax attribute) process_block_func() (volara.blockwise.AffAgglom method) (volara.blockwise.ApplyShift method) (volara.blockwise.Argmax method) (volara.blockwise.BlockwiseTask method) (volara.blockwise.ComputeShift method) (volara.blockwise.DistanceAgglom method) (volara.blockwise.ExtractFrags method) (volara.blockwise.GraphMWS method) (volara.blockwise.Relabel method) (volara.blockwise.SeededExtractFrags method) (volara.blockwise.Threshold method) process_blocks() (volara.blockwise.BlockwiseTask method) process_roi() (volara.blockwise.BlockwiseTask method) R randomized_strides (volara.blockwise.ExtractFrags attribute) (volara.blockwise.SeededExtractFrags attribute) read_write_conflict (volara.blockwise.AffAgglom attribute) (volara.blockwise.ApplyShift attribute) (volara.blockwise.Argmax attribute) (volara.blockwise.BlockwiseTask attribute) (volara.blockwise.ComputeShift attribute) (volara.blockwise.DistanceAgglom attribute) (volara.blockwise.ExtractFrags attribute) (volara.blockwise.GraphMWS attribute) (volara.blockwise.Relabel attribute) (volara.blockwise.SeededExtractFrags attribute) (volara.blockwise.Threshold attribute) remove_debris (volara.blockwise.ExtractFrags attribute) roi (volara.blockwise.BlockwiseTask attribute) run_blockwise() (volara.blockwise.BlockwiseTask method) S scale_shift (volara.datasets.Raw attribute) scores (volara.blockwise.AffAgglom attribute) seg_data (volara.blockwise.Relabel attribute) segs_data (volara.blockwise.SeededExtractFrags attribute) sem_data (volara.blockwise.Argmax attribute) shift_threshold (volara.blockwise.ApplyShift attribute) shifts (volara.blockwise.ApplyShift attribute) (volara.blockwise.ComputeShift attribute) sigma (volara.blockwise.ExtractFrags attribute) spoof() (volara.blockwise.BlockwiseTask method) (volara.datasets.Dataset method) (volara.dbs.DB method) (volara.dbs.PostgreSQL method) (volara.dbs.SQLite method) stack (volara.datasets.Raw attribute) starting_lut (volara.blockwise.GraphMWS attribute) storage (volara.blockwise.DistanceAgglom attribute) store (volara.datasets.Dataset attribute) strides (volara.blockwise.ExtractFrags attribute) (volara.blockwise.SeededExtractFrags attribute) T target (volara.blockwise.ComputeShift attribute) task() (volara.blockwise.BlockwiseTask method) task_name (volara.blockwise.AffAgglom property) (volara.blockwise.ApplyShift property) (volara.blockwise.Argmax property) (volara.blockwise.BlockwiseTask property) (volara.blockwise.ComputeShift property) (volara.blockwise.DistanceAgglom property) (volara.blockwise.ExtractFrags property) (volara.blockwise.GraphMWS property) (volara.blockwise.Relabel property) (volara.blockwise.SeededExtractFrags property) (volara.blockwise.Threshold property) task_type (volara.blockwise.AffAgglom attribute) (volara.blockwise.ApplyShift attribute) (volara.blockwise.Argmax attribute) (volara.blockwise.ComputeShift attribute) (volara.blockwise.DistanceAgglom attribute) (volara.blockwise.ExtractFrags attribute) (volara.blockwise.GraphMWS attribute) (volara.blockwise.Relabel attribute) (volara.blockwise.SeededExtractFrags attribute) (volara.blockwise.Threshold attribute) threshold (volara.blockwise.Threshold attribute) U units (volara.datasets.Dataset attribute) user (volara.dbs.PostgreSQL attribute) V volara command line option --log-level volara-blockwise-worker command line option --config-file -c volara.datasets module volara.dbs module voxel_size (volara.blockwise.ApplyShift property) (volara.blockwise.Argmax property) (volara.blockwise.ComputeShift property) (volara.blockwise.ExtractFrags property) (volara.blockwise.Relabel property) (volara.blockwise.SeededExtractFrags property) (volara.blockwise.Threshold property) (volara.datasets.Dataset attribute) W watershed_in_block() (volara.blockwise.ExtractFrags method) weights (volara.blockwise.GraphMWS attribute) worker_config (volara.blockwise.BlockwiseTask attribute) worker_func() (volara.blockwise.BlockwiseTask method) writable (volara.datasets.Dataset attribute) write_roi (volara.blockwise.AffAgglom property) (volara.blockwise.ApplyShift property) (volara.blockwise.Argmax property) (volara.blockwise.BlockwiseTask property) (volara.blockwise.ComputeShift property) (volara.blockwise.DistanceAgglom property) (volara.blockwise.ExtractFrags property) (volara.blockwise.GraphMWS property) (volara.blockwise.Relabel property) (volara.blockwise.SeededExtractFrags property) (volara.blockwise.Threshold property) write_size (volara.blockwise.AffAgglom property) (volara.blockwise.ApplyShift property) (volara.blockwise.Argmax property) (volara.blockwise.BlockwiseTask property) (volara.blockwise.ComputeShift property) (volara.blockwise.DistanceAgglom property) (volara.blockwise.ExtractFrags property) (volara.blockwise.GraphMWS property) (volara.blockwise.Relabel property) (volara.blockwise.SeededExtractFrags property) (volara.blockwise.Threshold property)